Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2042048

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042048


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5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M21Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000213786 NHP2P2 NHP2 ribonucleoprotein pseudogene 2 3.9897 0.0000
2 ENSG00000179709 NLRP8 NLR family pyrin domain containing 8 3.8074 0.0000
3 ENSG00000243385 ribosomal protein L13 (RPL13) pseudogene 3.8074 0.0000
4 ENSG00000115816 CEBPZ CCAAT enhancer binding protein zeta 3.7004 0.0000
5 ENSG00000249995 ECM1P2 extracellular matrix protein 1 pseudogene 2 3.7004 0.0000
6 ENSG00000251195 chromosome 4 open reading frame 33 (C4orf33) pseudogene 3.7004 0.0000
7 ENSG00000267615 novel transcript, antisense to ACOX1 3.7004 0.0000
8 ENSG00000264897 MIR3921 microRNA 3921 3.6773 0.0000
9 ENSG00000259180 novel transcript, antisense to PRTG 3.6716 0.0000
10 ENSG00000257005 S100 calcium binding protein A11 (S100A11) pseudogene 3.6699 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000276054 novel transcript, sense intronic to C17orf78 -2.4167 0.0057
63172 ENSG00000248458 novel transcript, antisense to SGIP1 -2.4154 0.2577
63171 ENSG00000215477 RCN1P1 reticulocalbin 1 pseudogene 1 -2.4154 0.2577
63170 ENSG00000275768 SLC2AXP1 solute carrier family 2 pseudogene 1 -2.4112 0.0038
63169 ENSG00000272967 novel transcript, antisense to ADPRH -2.4096 0.6242
63168 ENSG00000250902 SMAD1-AS1 SMAD1 antisense RNA 1 -2.4096 0.6242
63167 ENSG00000201557 SNORD114-15 small nucleolar RNA, C/D box 114-15 -2.4096 0.6242
63166 ENSG00000199914 SNORD114-16 small nucleolar RNA, C/D box 114-16 -2.4096 0.6242
63165 ENSG00000199593 SNORD114-14 small nucleolar RNA, C/D box 114-14 -2.4096 0.6242
63164 ENSG00000144843 ADPRH ADP-ribosylarginine hydrolase -2.4096 0.6242

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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