Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2042049

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042049


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5030206000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M22Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MI) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000255005 novel transcript 5.5546 0.0000
2 ENSG00000207956 MIR579 microRNA 579 5.3219 0.0000
3 ENSG00000212333 RNA5SP213 RNA, 5S ribosomal pseudogene 213 5.2479 0.0000
4 ENSG00000212365 RNA5SP332 RNA, 5S ribosomal pseudogene 332 5.2479 0.0000
5 ENSG00000227779 NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3 12kDa pseudogene 5.2479 0.0000
6 ENSG00000257121 peroxiredoxin 6 (PRDX6) pseudogene 5.0444 0.0000
7 ENSG00000265484 novel transcript 5.0444 0.0000
8 ENSG00000254187 novel transcript 4.9069 0.0000
9 ENSG00000254947 OR8K4P olfactory receptor family 8 subfamily K member 4 pseudogene 4.8580 0.0000
10 ENSG00000256799 RAB5A, member RAS oncogene family (RAB5A) pseudogene 4.8580 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000212802 RPL15P3 ribosomal protein L15 pseudogene 3 -3.4969 0.1180
63172 ENSG00000283519 U2 spliceosomal RNA -3.4956 0.3804
63171 ENSG00000271426 coiled-coil domain containing 84 (CCDC84) pseudogene -3.4924 0.0330
63170 ENSG00000107362 ABHD17B abhydrolase domain containing 17B, depalmitoylase -3.4921 0.0001
63169 ENSG00000237782 PLLPP1 PLLP pseudogene 1 -3.4916 0.0100
63168 ENSG00000284049 MIR650 microRNA 650 -3.4886 0.3978
63167 ENSG00000278196 IGLV2-8 immunoglobulin lambda variable 2-8 -3.4886 0.3978
63166 ENSG00000229906 SNRPGP11 small nuclear ribonucleoprotein polypeptide G pseudogene 11 -3.4886 0.4002
63165 ENSG00000186980 KRTAP23-1 keratin associated protein 23-1 -3.4886 0.6349
63164 ENSG00000213930 GALT galactose-1-phosphate uridylyltransferase -3.4882 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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