Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2042050

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042050


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7180101000000000000000-755Sequence Read ArchiveSRP062328SRP062328_M23Human oocyte DNA methylomeMethylomeOocyte (germinal vesicle (GV) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000248400 ST13P12 ST13, Hsp70 interacting protein pseudogene 12 5.2095 0.0000
2 ENSG00000253493 interferon induced transmembrane protein 3 (1-8U) (IFITM3) pseudogene 5.0875 0.0000
3 ENSG00000231328 TPT1P7 tumor protein, translationally-controlled 1 pseudogene 7 4.9069 0.0000
4 ENSG00000232131 NCOA7-AS1 NCOA7 antisense RNA 1 4.8580 0.0000
5 ENSG00000248200 ribosomal protein L17 (RPL17) pseudogene 4.7549 0.0000
6 ENSG00000254352 chromosome 4 open reading frame 46 (C4orf46) pseudogene 4.7549 0.0000
7 ENSG00000202206 RNU6-169P RNA, U6 small nuclear 169, pseudogene 4.7004 0.0000
8 ENSG00000204993 CRTC1P1 CRTC1 pseudogene 1 4.7004 0.0000
9 ENSG00000260322 novel transcript 4.7004 0.0000
10 ENSG00000273629 U7 small nuclear RNA 4.7004 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63172 ENSG00000256651 taste receptor, type 2 pseudogene -3.3219 1.0000
63171 ENSG00000256400 iron-responsive element binding protein 2 (IREB2) -3.3219 1.0000
63170 ENSG00000255184 tripartite motif-containing protein 43 (TRIM43) pseudogene -3.3219 0.4002
63169 ENSG00000253010 RN7SKP256 RN7SK pseudogene 256 -3.3219 1.0000
63168 ENSG00000252108 RNU6-1232P RNA, U6 small nuclear 1232, pseudogene -3.3219 1.0000
63167 ENSG00000249770 MTND6P17 MT-ND6 pseudogene 17 -3.3219 0.6217
63166 ENSG00000249247 MTCYBP17 MT-CYB pseudogene 17 -3.3219 0.6217
63165 ENSG00000243859 RPL5P17 ribosomal protein L5 pseudogene 17 -3.3219 1.0000
63164 ENSG00000243548 RN7SL101P RNA, 7SL, cytoplasmic 101, pseudogene -3.3219 1.0000
10 ENSG00000273629 U7 small nuclear RNA 4.7004 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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