Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2042051

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042051


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5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M24Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000231729 ARHGEF9-IT1 ARHGEF9 intronic transcript 1 5.1293 0.0000
2 ENSG00000235147 pseudogene similar to part of Tripartite motif-containing protein family 4.9542 0.0000
3 ENSG00000207461 RNU6-253P RNA, U6 small nuclear 253, pseudogene 4.9305 0.0000
4 ENSG00000282879 translation machinery associated 7 homolog (S. cerevisiae) (TMA7) pseudogene 4.8580 0.0000
5 ENSG00000147592 LACTB2 lactamase beta 2 4.8074 0.0000
6 ENSG00000231500 RPS18 ribosomal protein S18 4.8074 0.0000
7 ENSG00000235196 zinc finger protein pseudogene 4.7549 0.0000
8 ENSG00000248114 UDP glycosyltransferase 1 family, polypeptide A3 (UGT1A3) pseudogene 4.7549 0.0000
9 ENSG00000252810 RNU6-345P RNA, U6 small nuclear 345, pseudogene 4.7549 0.0000
10 ENSG00000201744 RNU6-34P RNA, U6 small nuclear 34, pseudogene 4.7004 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000211650 IGLV5-45 immunoglobulin lambda variable 5-45 -3.3074 0.2495
63172 ENSG00000281348 novel protein -3.3067 0.0002
63171 ENSG00000253179 CALCP calcitonin pseudogene -3.3060 0.0002
63170 ENSG00000280789 PAGR1 PAXIP1 associated glutamate rich protein 1 -3.3050 0.0005
63169 ENSG00000156466 GDF6 growth differentiation factor 6 -3.3036 0.1230
63168 ENSG00000135502 SLC26A10 solute carrier family 26 member 10 -3.3031 0.0000
63167 ENSG00000272630 novel transcript -3.2984 0.0000
63166 ENSG00000222312 RNA5SP178 RNA, 5S ribosomal pseudogene 178 -3.2925 0.2522
63165 ENSG00000196240 OR2T2 olfactory receptor family 2 subfamily T member 2 -3.2925 0.2495
63164 ENSG00000276251 novel transcript -3.2915 0.0196

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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