Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2042052

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042052


Profile download
5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M25Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000252072 RNA5SP320 RNA, 5S ribosomal pseudogene 320 6.6147 0.0000
2 ENSG00000143469 SYT14 synaptotagmin 14 6.4919 0.0000
3 ENSG00000259636 novel transcript 6.3399 0.0000
4 ENSG00000232079 LINC01697 long intergenic non-protein coding RNA 1697 6.2288 0.0000
5 ENSG00000242759 LINC00882 long intergenic non-protein coding RNA 882 6.1497 0.0000
6 ENSG00000279469 TEC 6.0875 0.0000
7 ENSG00000226454 novel transcript 6.0661 0.0000
8 ENSG00000184860 SDR42E1 short chain dehydrogenase/reductase family 42E, member 1 5.9307 0.0000
9 ENSG00000258066 novel transcript 5.8826 0.0000
10 ENSG00000185522 LMNTD2 lamin tail domain containing 2 5.8688 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000224339 SC4MOP sterol-C4-methyl oxidase pseudogene -4.3923 0.2508
63172 ENSG00000223692 DIP2A-IT1 DIP2A intronic transcript 1 -4.3923 0.0479
63171 ENSG00000222004 LINC02860 long intergenic non-protein coding RNA 2860 -4.3923 0.2508
63170 ENSG00000220181 MTRES1P1 MTRES1 pseudogene 1 -4.3923 0.0479
63169 ENSG00000217770 FEM1AP3 fem-1 homolog A pseudogene 3 -4.3923 0.2508
63168 ENSG00000217707 SERPINB8P1 serpin family B member 8 pseudogene 1 -4.3923 0.2508
63167 ENSG00000214513 NOTO notochord homeobox -4.3923 0.2508
63166 ENSG00000206344 HCG27 HLA complex group 27 -4.3923 0.0479
63165 ENSG00000206105 KRTAP20-4 keratin associated protein 20-4 -4.3923 0.2508
63164 ENSG00000204257 HLA-DMA major histocompatibility complex, class II, DM alpha -4.3923 0.0479

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...