Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2042053

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042053


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5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M26Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000178586 OR6B3 olfactory receptor family 6 subfamily B member 3 6.5699 0.0000
2 ENSG00000207016 SNORA36C small nucleolar RNA, H/ACA box 36C 6.4919 0.0000
3 ENSG00000183161 FANCF FA complementation group F 6.3750 0.0000
4 ENSG00000204599 TRIM39 tripartite motif containing 39 6.3038 0.0000
5 ENSG00000248167 TRIM39-RPP21 TRIM39-RPP21 readthrough 6.3038 0.0000
6 ENSG00000270604 HCG17 HLA complex group 17 6.3038 0.0000
7 ENSG00000137288 UQCC2 ubiquinol-cytochrome c reductase complex assembly factor 2 6.2854 0.0000
8 ENSG00000206989 SNORD63 small nucleolar RNA, C/D box 63 6.2854 0.0000
9 ENSG00000222937 SNORD63B small nucleolar RNA, C/D box 63B 6.2854 0.0000
10 ENSG00000266509 MIR3934 microRNA 3934 6.2854 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000258943 novel transcript -4.6552 0.0000
63172 ENSG00000137571 SLCO5A1 solute carrier organic anion transporter family member 5A1 -4.6545 0.0000
63170 ENSG00000249745 HMGB1P28 high mobility group box 1 pseudogene 28 -4.6529 0.0000
63169 ENSG00000273549 Metazoan signal recognition particle RNA -4.6495 0.0000
63168 ENSG00000275448 H3 histone, family 3B (H3.3B) (H3F3B) pseudogene -4.6439 0.1625
63167 ENSG00000275293 Metazoan signal recognition particle RNA -4.6439 0.0017
63166 ENSG00000271315 polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa (POLR2K) pseudogene -4.6439 0.0206
63165 ENSG00000266356 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide (YWHAE) pseudogene -4.6439 0.1625
63164 ENSG00000266105 epsin- like pseudogene -4.6439 0.1625
10 ENSG00000266509 MIR3934 microRNA 3934 6.2854 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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