Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2042054

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042054


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5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M27Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000017483 SLC38A5 solute carrier family 38 member 5 4.3219 0.0000
2 ENSG00000200769 Y RNA 4.1699 0.0000
3 ENSG00000231259 ANAPC1P2 ANAPC1 pseudogene 2 4.0875 0.0000
4 ENSG00000260161 MTCYBP28 MT-CYB pseudogene 28 4.0875 0.0000
5 ENSG00000266931 required for meiotic nuclear division 5 homolog A (S. cerevisiae) (RMND5A) pseudogene 4.0875 0.0000
6 ENSG00000201298 RNU6-1164P RNA, U6 small nuclear 1164, pseudogene 4.0000 0.0000
8 ENSG00000207711 MIR525 microRNA 525 3.8074 0.0000
9 ENSG00000207771 MIR550A1 microRNA 550a-1 3.8074 0.0000
10 ENSG00000226339 RPS26P56 ribosomal protein S26 pseudogene 56 3.8074 0.0000
63164 ENSG00000228488 novel transcript -2.5850 1.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000232533 novel transcript -2.5850 0.6238
63172 ENSG00000232325 novel transcript -2.5850 1.0000
63171 ENSG00000231947 MTND2P24 MT-ND2 pseudogene 24 -2.5850 0.6238
63170 ENSG00000231788 RPL31P50 ribosomal protein L31 pseudogene 50 -2.5850 0.0002
63169 ENSG00000231610 PIK3CDP1 phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta pseudogene 1 -2.5850 1.0000
63168 ENSG00000231204 novel transcript -2.5850 1.0000
63167 ENSG00000230990 putative novel transcript. -2.5850 1.0000
63166 ENSG00000230866 LINC02558 long intergenic non-protein coding RNA 2558 -2.5850 1.0000
63165 ENSG00000229708 MARK2P12 microtubule affinity regulating kinase 2 pseudogene 12 -2.5850 1.0000
63164 ENSG00000228488 novel transcript -2.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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