Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2042055

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042055


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5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M28Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000252914 RNU6-789P RNA, U6 small nuclear 789, pseudogene 3.9069 0.0000
2 ENSG00000212167 RNU6-763P RNA, U6 small nuclear 763, pseudogene 3.5850 0.0000
3 ENSG00000224540 TFDP1P1 TFDP1 pseudogene 1 3.5850 0.0000
4 ENSG00000236610 SOCS5P1 suppressor of cytokine signaling 5 pseudogene 1 3.5850 0.0000
5 ENSG00000239149 SNORA59A small nucleolar RNA, H/ACA box 59A 3.5850 0.0000
6 ENSG00000242094 FOXP1-IT1 FOXP1 intronic transcript 1 3.4594 0.0000
7 ENSG00000257852 gamma-aminobutyric acid (GABA) A receptor, pi (GABRP) pseudogene 3.4594 0.0000
8 ENSG00000259727 novel transcript 3.4594 0.0000
9 ENSG00000267583 novel transcript 3.4594 0.0000
10 ENSG00000277855 novel transcript, antisense to FOXP1 3.4594 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000266283 novel transcript, antisense to GATA6 -2.3219 1.0000
63172 ENSG00000266036 novel transcript, antisense to SLC9A3R1 -2.3219 0.0043
63171 ENSG00000265693 zinc finger protein 695 (ZNF695) pseudogene -2.3219 0.1670
63170 ENSG00000264058 novel transcript -2.3219 1.0000
63169 ENSG00000263583 MIR4522 microRNA 4522 -2.3219 1.0000
63168 ENSG00000263453 NA -2.3219 1.0000
63167 ENSG00000261816 novel transcript -2.3219 1.0000
63166 ENSG00000261553 novel transcript -2.3219 1.0000
63165 ENSG00000261341 novel protein -2.3219 1.0000
63164 ENSG00000260458 KCNJ18 potassium inwardly rectifying channel subfamily J member 18 -2.3219 0.0008

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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