Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2042056

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2042056


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5030203000000000000000-761Sequence Read ArchiveSRP062328SRP062328_M29Human oocyte DNA methylomeMethylomeOocyte (mature metaphase (MII) stage )HumanGenitaliaBisulfite-Seq (WGBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000266274 RN7SL138P RNA, 7SL, cytoplasmic 138, pseudogene 4.8580 0.0000
2 ENSG00000173389 IQCF1 IQ motif containing F1 4.7549 0.0000
3 ENSG00000228438 ribosomal protein L31 (RPL31) pseudogene 4.7004 0.0000
4 ENSG00000177352 CCDC71 coiled-coil domain containing 71 4.6439 0.0000
5 ENSG00000185909 KLHDC8B kelch domain containing 8B 4.6439 0.0000
6 ENSG00000270776 ribosomal protein L22 (RPL22) pseudogene 4.6439 0.0000
7 ENSG00000214108 TPT1P5 tumor protein, translationally-controlled 1 pseudogene 5 4.5850 0.0000
8 ENSG00000227806 OR5W1P olfactory receptor family 5 subfamily W member 1 pseudogene 4.5850 0.0000
9 ENSG00000283378 CNTNAP3C contactin associated protein family member 3C 4.5850 0.0000
10 ENSG00000048405 ZNF800 zinc finger protein 800 4.5236 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000271392 novel transcript, sense intronic to MMP28 -3.3219 1.0000
63172 ENSG00000269839 zinc finger protein 738 (ZNF738) pseudogene -3.3219 1.0000
63171 ENSG00000266835 GAPLINC gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA -3.3219 1.0000
63170 ENSG00000266102 novel transcript -3.3219 0.1651
63169 ENSG00000266078 MIR4432 microRNA 4432 -3.3219 1.0000
63168 ENSG00000266039 MIR4509-2 microRNA 4509-2 -3.3219 1.0000
63167 ENSG00000264876 novel transcript -3.3219 0.1651
63166 ENSG00000262990 major histocompatibility complex, class I, F (HLA-F) pseudogene -3.3219 1.0000
63165 ENSG00000262831 novel transcript, antisense P4HB -3.3219 0.1651
63164 ENSG00000261798 novel transcript, antisense to BMP8B -3.3219 0.3952

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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