Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2146951

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2146951


Profile download
5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M1Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000280191 LINC01669 long intergenic non-protein coding RNA 1669 3.4594 0.0000
2 ENSG00000200478 SNORD115-41 small nucleolar RNA, C/D box 115-41 2.8074 0.0000
3 ENSG00000265442 MIR3941 microRNA 3941 2.8074 0.0000
4 ENSG00000224323 DPRXP1 divergent-paired related homeobox pseudogene 1 2.5850 0.0001
5 ENSG00000243733 novel transcript 2.5850 0.0000
6 ENSG00000255790 novel transcript 2.5850 0.0001
7 ENSG00000243593 LINC02049 long intergenic non-protein coding RNA 2049 2.5294 0.0000
8 ENSG00000258752 novel transcript, antisense to FOXN3 2.5118 0.0000
9 ENSG00000272460 SNORD115-40 small nucleolar RNA, C/D box 115-40 2.3955 0.0000
10 ENSG00000119321 FKBP15 FKBP prolyl isomerase 15 2.3219 0.0008

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000230082 PRRT3-AS1 PRRT3 antisense RNA 1 -1.6321 0.0000
63172 ENSG00000124688 MAD2L1BP MAD2L1 binding protein -1.6318 0.0000
63171 ENSG00000016402 IL20RA interleukin 20 receptor subunit alpha -1.6314 0.0003
63170 ENSG00000268902 CSAG2 CSAG family member 2 -1.6314 0.0001
63169 ENSG00000264963 RN7SL440P RNA, 7SL, cytoplasmic 440, pseudogene -1.6311 0.0597
63168 ENSG00000238037 OOSP1P1 oocyte secreted protein 1 pseudogene 1 -1.6309 0.1260
63167 ENSG00000200171 Y RNA -1.6309 0.1260
63166 ENSG00000264200 MIR4693 microRNA 4693 -1.6294 0.4915
63165 ENSG00000186283 TOR3A torsin family 3 member A -1.6292 0.0020
63164 ENSG00000236287 ZBED5 zinc finger BED-type containing 5 -1.6285 0.0001

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...