Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2146952

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2146952


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M2Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000265442 MIR3941 microRNA 3941 2.8074 0.0001
2 ENSG00000206228 HNRNPA1P4 heterogeneous nuclear ribonucleoprotein A1 pseudogene 4 2.5850 0.0000
3 ENSG00000253958 CLDN23 claudin 23 2.5490 0.0000
4 ENSG00000222248 RNA5SP201 RNA, 5S ribosomal pseudogene 201 2.3900 0.0000
5 ENSG00000283402 mitochondrially encoded cytochrome b (MT-CYB) pseudogene 2.3900 0.0000
6 ENSG00000280191 LINC01669 long intergenic non-protein coding RNA 1669 2.3248 0.0000
7 ENSG00000118873 RAB3GAP2 RAB3 GTPase activating non-catalytic protein subunit 2 2.3219 0.0000
8 ENSG00000135413 LACRT lacritin 2.3219 0.0025
9 ENSG00000162613 FUBP1 far upstream element binding protein 1 2.3219 0.0000
10 ENSG00000181552 EDDM3B epididymal protein 3B 2.3219 0.0025

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000173157 ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif 20 -1.6441 0.0002
63172 ENSG00000116096 SPR sepiapterin reductase -1.6438 0.0000
63171 ENSG00000156298 TSPAN7 tetraspanin 7 -1.6437 0.0001
63170 ENSG00000281186 LINC00706 long intergenic non-protein coding RNA 706 -1.6434 0.0007
63169 ENSG00000238266 LINC00707 long intergenic non-protein coding RNA 707 -1.6434 0.0007
63168 ENSG00000225063 TMCC2-AS1 TMCC2 antisense RNA 1 -1.6431 0.0000
63167 ENSG00000188004 SNHG28 small nucleolar RNA host gene 28 -1.6418 0.0000
63166 ENSG00000267056 inositol polyphosphate multikinase (IPMK) pseudogene -1.6417 0.0001
63165 ENSG00000171530 TBCA tubulin folding cofactor A -1.6416 0.0000
63164 ENSG00000214593 ribosomal protein S10 (RPS10) pseudogene -1.6391 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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