Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2146953

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2146953


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M3Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000116191 RALGPS2 Ral GEF with PH domain and SH3 binding motif 2 2.5850 0.0000
2 ENSG00000222546 RNA5SP251 RNA, 5S ribosomal pseudogene 251 2.5850 0.0005
3 ENSG00000223941 LINC01014 long intergenic non-protein coding RNA 1014 2.5850 0.0005
4 ENSG00000228981 ribosomal protein S2 (RPS2) pseudogene 2.5850 0.0005
5 ENSG00000275163 potassium large conductance calcium-activated channel, subfamily M, beta member 2 (KCNMB2-IT1 - KCNMB2 readthrough transcript) 2.5850 0.0005
6 ENSG00000230975 novel transcript 2.5569 0.0000
7 ENSG00000214626 POLR3DP1 RNA polymerase III subunit D pseudogene 1 2.4534 0.0000
8 ENSG00000164220 F2RL2 coagulation factor II thrombin receptor like 2 2.3219 0.0000
9 ENSG00000201077 RNU6-188P RNA, U6 small nuclear 188, pseudogene 2.3219 0.0021
10 ENSG00000206807 RNU6-815P RNA, U6 small nuclear 815, pseudogene 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000204381 LAYN layilin -1.6811 0.0000
63172 ENSG00000276747 PADI6 peptidyl arginine deiminase 6 -1.6807 0.0012
63171 ENSG00000120094 HOXB1 homeobox B1 -1.6795 0.0511
63170 ENSG00000232325 novel transcript -1.6789 0.0003
63169 ENSG00000272459 novel transcript -1.6784 0.0000
63168 ENSG00000163251 FZD5 frizzled class receptor 5 -1.6784 0.0000
63167 ENSG00000248440 novel transcript -1.6782 0.0000
63166 ENSG00000188848 BEND4 BEN domain containing 4 -1.6770 0.0000
63165 ENSG00000222000 novel transcript, antisense to CNGA3 -1.6768 0.0000
63164 ENSG00000115234 SNX17 sorting nexin 17 -1.6765 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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