Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2146954

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2146954


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M4Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000236056 GAPDHP14 glyceraldehyde-3-phosphate dehydrogenase pseudogene 14 2.8074 0.0000
2 ENSG00000233531 DEFA10P defensin alpha 10, pseudogene 2.5850 0.0000
3 ENSG00000256037 MRPL40P1 mitochondrial ribosomal protein L40 pseudogene 1 2.5850 0.0000
4 ENSG00000258608 DNAJC19P9 DnaJ heat shock protein family (Hsp40) member C19 pseudogene 9 2.5850 0.0002
6 ENSG00000273444 methionyl aminopeptidase 2 (METAP2) pseudogene 2.5850 0.0002
7 ENSG00000279125 TEC 2.5850 0.0000
8 ENSG00000271533 novel transcript, sense intronic FTX 2.4459 0.0000
9 ENSG00000256963 pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish) ( PPDPF) pseudogene 2.4132 0.0000
10 ENSG00000107758 PPP3CB protein phosphatase 3 catalytic subunit beta 2.3627 0.0000
63164 ENSG00000170523 KRT83 keratin 83 -1.6820 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000261420 novel transcript, antisense to BRP44L -1.6883 0.0000
63172 ENSG00000186583 SPATC1 spermatogenesis and centriole associated 1 -1.6878 0.0143
63171 ENSG00000162913 OBSCN-AS1 OBSCN antisense RNA 1 -1.6878 0.0000
63170 ENSG00000169515 CCDC8 coiled-coil domain containing 8 -1.6874 0.0000
63169 ENSG00000165156 ZHX1 zinc fingers and homeoboxes 1 -1.6870 0.0000
63168 ENSG00000139428 MMAB metabolism of cobalamin associated B -1.6868 0.0000
63167 ENSG00000178338 ZNF354B zinc finger protein 354B -1.6864 0.0000
63166 ENSG00000263343 filamin B, beta (FLNB) pseudogene -1.6857 0.0002
63165 ENSG00000163623 NKX6-1 NK6 homeobox 1 -1.6848 0.0000
63164 ENSG00000170523 KRT83 keratin 83 -1.6820 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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