Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481532

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481532


Profile download
7010000000000000000000-770Sequence Read ArchiveSRP074598SRP074598_M5Single-cell DNA methylome sequencing of human preimplantation embryosMethylome2-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000204025 TRPC5OS TRPC5 opposite strand 2.5850 0.0000
2 ENSG00000278587 NA 2.5850 0.0000
3 ENSG00000234891 novel transcript 2.3219 0.0000
4 ENSG00000250475 ribosomal protein L6 (RPL6) pseudogene 2.3219 0.0000
5 ENSG00000200248 RNA5SP214 RNA, 5S ribosomal pseudogene 214 2.2925 0.0000
6 ENSG00000237314 RPL12P39 ribosomal protein L12 pseudogene 39 2.2925 0.0000
7 ENSG00000228120 novel transcript 2.1610 0.0000
8 ENSG00000248530 BCL2L12P1 BCL2 like 12 pseudogene 1 2.1610 0.0000
9 ENSG00000253493 interferon induced transmembrane protein 3 (1-8U) (IFITM3) pseudogene 2.1610 0.0000
10 ENSG00000216359 glucosaminyl (N-acetyl) transferase 1, core 2 (beta-1,6-N-acetylglucosaminyltransferase) (GCNT1) pseudogene 2.1016 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000261480 novel transcript -1.6340 0.0000
63172 ENSG00000284418 novel transcript -1.6340 0.3850
63171 ENSG00000254609 phospholipase A2, group X (PLA2G10) pseudogene -1.6340 0.6211
63170 ENSG00000241418 MCRIP2P1 MAPK regulated corepressor interacting protein 2 pseudogene 1 -1.6340 0.0585
63169 ENSG00000162676 GFI1 growth factor independent 1 transcriptional repressor -1.6340 0.0000
63168 ENSG00000144354 CDCA7 cell division cycle associated 7 -1.6339 0.0001
63167 ENSG00000264456 novel transcript, sense intronic RNF135 -1.6339 0.0000
63166 ENSG00000254473 novel transcript, antisense to UBQLN1 -1.6337 0.0000
63165 ENSG00000114388 NPRL2 NPR2 like, GATOR1 complex subunit -1.6337 0.0000
63164 ENSG00000259405 ISCA1P4 iron-sulfur cluster assembly 1 pseudogene 4 -1.6336 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...