Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481533

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481533


Profile download
7010000000000000000000-770Sequence Read ArchiveSRP074598SRP074598_M6Single-cell DNA methylome sequencing of human preimplantation embryosMethylome2-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000279011 tec 3.4594 0.0000
2 ENSG00000253190 novel transcript 3.1699 0.0000
3 ENSG00000207394 RNU6-1060P RNA, U6 small nuclear 1060, pseudogene 3.0000 0.0000
4 ENSG00000237135 DDX10P1 DEAD-box helicase 10 pseudogene 1 3.0000 0.0000
5 ENSG00000239035 SNORD13D small nucleolar RNA, C/D box 13D 3.0000 0.0000
6 ENSG00000263666 SNORA70D small nucleolar RNA, H/ACA box 70D 3.0000 0.0000
7 ENSG00000234766 LINC01496 long intergenic non-protein coding RNA 1496 2.9037 0.0000
8 ENSG00000133136 GNG5P2 G protein subunit gamma 5 pseudogene 2 2.8074 0.0000
9 ENSG00000163563 MNDA myeloid cell nuclear differentiation antigen 2.8074 0.0000
10 ENSG00000201033 RNU1-96P RNA, U1 small nuclear 96, pseudogene 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000266553 RN7SL356P RNA, 7SL, cytoplasmic 356, pseudogene -2.0644 0.3932
63172 ENSG00000183580 FBXL7 F-box and leucine rich repeat protein 7 -2.0629 0.0002
63171 ENSG00000255408 PCDHA3 protocadherin alpha 3 -2.0626 0.0000
63170 ENSG00000277410 H2BP5 H2B histone pseudogene 5 -2.0624 0.0090
63169 ENSG00000173039 RELA RELA proto-oncogene, NF-kB subunit -2.0623 0.0031
63168 ENSG00000284388 MIR4496 microRNA 4496 -2.0603 0.1059
63167 ENSG00000237436 CAMTA1-DT CAMTA1 divergent transcript -2.0603 0.0005
63166 ENSG00000278048 U2 spliceosomal RNA -2.0599 0.0861
63165 ENSG00000199516 Y RNA -2.0595 0.0000
63164 ENSG00000266751 MIR3661 microRNA 3661 -2.0591 0.0205

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...