Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481535

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481535


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7010000000000000000000-770Sequence Read ArchiveSRP074598SRP074598_M8Single-cell DNA methylome sequencing of human preimplantation embryosMethylome2-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000253452 novel transcript 3.0000 0.0000
2 ENSG00000235277 novel transcript 2.8074 0.0000
3 ENSG00000224697 NEFMP1 neurofilament medium pseudogene 1 2.5850 0.0000
4 ENSG00000230823 CBX1P1 chromobox 1 pseudogene 1 2.5850 0.0000
5 ENSG00000252470 RNU6-551P RNA, U6 small nuclear 551, pseudogene 2.5850 0.0000
6 ENSG00000259892 amyloid beta (A4) precursor protein-binding, family A, member 2 (APBA2) pseudogene 2.4340 0.0000
7 ENSG00000172289 OR10V1 olfactory receptor family 10 subfamily V member 1 2.3219 0.0001
8 ENSG00000200789 RNU1-65P RNA, U1 small nuclear 65, pseudogene 2.3219 0.0001
9 ENSG00000204702 OR2J1 olfactory receptor family 2 subfamily J member 1 2.3219 0.0000
10 ENSG00000231824 AKAIN1 A-kinase anchor inhibitor 1 2.3219 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000181218 H2AW H2A.W histone -1.7312 0.0211
63172 ENSG00000174473 GALNTL6 polypeptide N-acetylgalactosaminyltransferase like 6 -1.7309 0.0000
63171 ENSG00000272031 ANKRD34A ankyrin repeat domain 34A -1.7306 0.0000
63170 ENSG00000224725 CEP57L1P1 centrosomal protein 57 like 1 pseudogene 1 -1.7301 0.0000
63169 ENSG00000239825 RN7SL549P RNA, 7SL, cytoplasmic 549, pseudogene -1.7300 0.0000
63168 ENSG00000261586 novel transcript -1.7300 0.0000
63167 ENSG00000266677 novel transcript -1.7291 0.0000
63166 ENSG00000249602 novel transcript -1.7289 0.0017
63165 ENSG00000237515 SHISA9 shisa family member 9 -1.7285 0.0000
63164 ENSG00000275155 novel transcript, sense intronic to ZNF423 -1.7281 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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