Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481536

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481536


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M9Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000260534 novel transcript 4.1627 0.0000
2 ENSG00000283798 MIR630 microRNA 630 4.1627 0.0000
3 ENSG00000173597 SULT1B1 sulfotransferase family 1B member 1 2.8074 0.0000
4 ENSG00000272155 novel transcript, antisense to MTFR1 2.8074 0.0000
6 ENSG00000226541 ribosomal protein L36 (RPL36) pseudogene 2.5850 0.0000
7 ENSG00000240721 RPS4XP15 ribosomal protein S4X pseudogene 15 2.5850 0.0000
8 ENSG00000243806 RPL7P18 ribosomal protein L7 pseudogene 18 2.5850 0.0000
9 ENSG00000251839 RNU7-12P RNA, U7 small nuclear 12 pseudogene 2.5850 0.0000
10 ENSG00000261630 novel transcript, antisense to FTO 2.5850 0.0000
63164 ENSG00000245573 BDNF-AS BDNF antisense RNA -2.0688 0.0023

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000215277 RNF212B ring finger protein 212B -2.0714 0.0000
63172 ENSG00000272884 novel transcript -2.0713 0.0000
63171 ENSG00000132846 ZBED3 zinc finger BED-type containing 3 -2.0711 0.0001
63170 ENSG00000137460 FHDC1 FH2 domain containing 1 -2.0705 0.0000
63169 ENSG00000113575 PPP2CA protein phosphatase 2 catalytic subunit alpha -2.0702 0.0061
63168 ENSG00000255021 novel transcript -2.0699 0.0039
63167 ENSG00000279211 family with sequence similarity 182, member B (FAM182B) pseudogene -2.0691 0.0019
63166 ENSG00000279265 TEC -2.0691 0.0000
63165 ENSG00000224138 novel transcript -2.0691 0.0000
63164 ENSG00000245573 BDNF-AS BDNF antisense RNA -2.0688 0.0023

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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