Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481537

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481537


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M10Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000240902 APOOP2 apolipoprotein O pseudogene 2 2.8074 0.0000
2 ENSG00000258689 LINC01269 long intergenic non-protein coding RNA 1269 2.6356 0.0000
3 ENSG00000203408 OR6C71P olfactory receptor family 6 subfamily C member 71 pseudogene 2.5850 0.0000
4 ENSG00000227118 BTF3P13 basic transcription factor 3 pseudogene 13 2.5850 0.0000
5 ENSG00000112796 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase family member 5 2.3219 0.0000
6 ENSG00000150782 IL18 interleukin 18 2.3219 0.0000
7 ENSG00000200389 RNU6-509P RNA, U6 small nuclear 509, pseudogene 2.3219 0.0000
8 ENSG00000218819 TDRD15 tudor domain containing 15 2.3219 0.0000
9 ENSG00000222649 Y RNA 2.3219 0.0000
10 ENSG00000226318 RPS3AP38 RPS3A pseudogene 38 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000174718 RESF1 retroelement silencing factor 1 -1.8680 0.0005
63172 ENSG00000235636 NUS1P1 NUS1 pseudogene 1 -1.8680 0.0058
63171 ENSG00000265168 novel transcript, antisense to ALDOC -1.8675 0.1288
63170 ENSG00000166006 KCNC2 potassium voltage-gated channel subfamily C member 2 -1.8666 0.0005
63169 ENSG00000160097 FNDC5 fibronectin type III domain containing 5 -1.8661 0.0000
63168 ENSG00000198042 MAK16 MAK16 homolog -1.8659 0.0001
63167 ENSG00000276411 novel transcript -1.8658 0.0000
63166 ENSG00000280331 TEC -1.8654 0.0442
63165 ENSG00000175104 TRAF6 TNF receptor associated factor 6 -1.8654 0.0442
63164 ENSG00000044524 EPHA3 EPH receptor A3 -1.8652 0.1690

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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