Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481538

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481538


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M11Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000254303 novel transcript 3.4594 0.0000
2 ENSG00000233125 ACTBP12 ACTB pseudogene 12 3.3284 0.0000
3 ENSG00000205293 LINC01602 long intergenic non-protein coding RNA 1602 3.1699 0.0000
4 ENSG00000227862 HNRNPA1P31 heterogeneous nuclear ribonucleoprotein A1 pseudogene 31 3.1699 0.0000
5 ENSG00000234187 AIMP1P1 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 pseudogene 1 3.1699 0.0000
7 ENSG00000267734 novel transcript, antisense to HS2ST1 3.1699 0.0000
9 ENSG00000162630 B3GALT2 beta-1,3-galactosyltransferase 2 3.0000 0.0000
10 ENSG00000162753 SLC9C2 solute carrier family 9 member C2 (putative) 3.0000 0.0000
63164 ENSG00000069248 NUP133 nucleoporin 133 -2.3510 0.1126
63165 ENSG00000249094 novel transcript -2.3516 0.0089

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000226124 FTCDNL1 formiminotransferase cyclodeaminase N-terminal like -2.3532 0.0000
63172 ENSG00000243749 TMEM35B transmembrane protein 35B -2.3531 0.0000
63171 ENSG00000136936 XPA XPA, DNA damage recognition and repair factor -2.3526 0.0000
63170 ENSG00000245112 SMARCA5-AS1 SMARCA5 antisense RNA 1 -2.3524 0.0000
63169 ENSG00000126790 L3HYPDH trans-L-3-hydroxyproline dehydratase -2.3522 0.0000
63168 ENSG00000272841 MAP3K4-AS1 MAP3K4 antisense RNA 1 -2.3520 0.0000
63167 ENSG00000128609 NDUFA5 NADH:ubiquinone oxidoreductase subunit A5 -2.3519 0.0043
63166 ENSG00000242893 RN7SL413P RNA, 7SL, cytoplasmic 413, pseudogene -2.3518 0.0003
63165 ENSG00000249094 novel transcript -2.3516 0.0089
63164 ENSG00000069248 NUP133 nucleoporin 133 -2.3510 0.1126

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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