Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481539

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481539


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M12Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000178660 ARMC10P1 armadillo repeat containing 10 pseudogene 1 3.8074 0.0000
2 ENSG00000239473 RPL7P38 ribosomal protein L7 pseudogene 38 2.8074 0.0000
3 ENSG00000241409 novel transcript 2.8074 0.0000
4 ENSG00000184227 ACOT1 acyl-CoA thioesterase 1 2.5850 0.0000
5 ENSG00000218189 POM121L14P POM121 transmembrane nucleoporin like 14, pseudogene 2.5850 0.0000
6 ENSG00000253229 HIGD1AP6 HIG1 hypoxia inducible domain family member 1A pseudogene 6 2.5850 0.0000
7 ENSG00000265699 MIR548AE2 microRNA 548ae-2 2.5850 0.0000
8 ENSG00000256021 ELOCP31 elongin C pseudogene 31 2.4037 0.0000
9 ENSG00000226498 RPSAP21 ribosomal protein SA pseudogene 21 2.3350 0.0000
10 ENSG00000176268 CYCSP34 CYCS pseudogene 34 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000278936 novel transcript, antisense to PCDHB16, PCDHB9, PCDHB10 and PCDHB11 -1.9345 0.0000
63172 ENSG00000278619 MRM1 mitochondrial rRNA methyltransferase 1 -1.9342 0.0000
63171 ENSG00000188133 TMEM215 transmembrane protein 215 -1.9334 0.0000
63170 ENSG00000139364 TMEM132B transmembrane protein 132B -1.9332 0.0000
63169 ENSG00000223505 RPL35AP5 ribosomal protein L35a pseudogene 5 -1.9330 0.7828
63168 ENSG00000250451 HOXC-AS1 HOXC cluster antisense RNA 1 -1.9326 0.0000
63167 ENSG00000017797 RALBP1 ralA binding protein 1 -1.9324 0.0000
63166 ENSG00000280277 TEC -1.9322 0.0658
63165 ENSG00000111880 RNGTT RNA guanylyltransferase and 5'-phosphatase -1.9322 0.0658
63164 ENSG00000249156 TAF11L12 TATA-box binding protein associated factor 11 like 12 -1.9308 0.6348

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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