Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481542

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481542


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M15Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230066 FAM197Y3 family with sequence similarity 197 Y-linked member 3 3.0000 0.0000
2 ENSG00000270073 TSPY6P testis specific protein Y-linked 6, pseudogene 3.0000 0.0000
3 ENSG00000283376 novel pseudogene 3.0000 0.0000
4 ENSG00000204250 LINC00587 long intergenic non-protein coding RNA 587 2.8074 0.0000
5 ENSG00000254238 novel transcript 2.6680 0.0000
6 ENSG00000252990 RNU1-54P RNA, U1 small nuclear 54, pseudogene 2.4534 0.0000
7 ENSG00000201155 RNU1-24P RNA, U1 small nuclear 24, pseudogene 2.3219 0.0001
8 ENSG00000215853 RPTN repetin 2.3219 0.0001
9 ENSG00000220184 HMGB3P18 high mobility group box 3 pseudogene 18 2.3219 0.0001
10 ENSG00000222467 Y RNA 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000100473 COCH cochlin -1.8142 0.0000
63172 ENSG00000224269 novel transcript -1.8130 0.0000
63171 ENSG00000077800 FKBP6 FKBP prolyl isomerase 6 -1.8128 0.0000
63170 ENSG00000176903 PNMA1 PNMA family member 1 -1.8126 0.0000
63169 ENSG00000249693 THEGL theg spermatid protein like -1.8125 0.0047
63168 ENSG00000257360 REST corepressor 2 (RCOR2) pseudogene -1.8115 0.2541
63167 ENSG00000206967 Y RNA -1.8115 0.2541
63166 ENSG00000253312 ankyrin repeat domain (ANKRD) pseudogene -1.8112 0.0000
63165 ENSG00000253186 coiled-coil domain containing 144 (CCDC144) pseudogene -1.8112 0.0000
63164 ENSG00000119681 LTBP2 latent transforming growth factor beta binding protein 2 -1.8109 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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