Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481543

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481543


Profile download
7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M16Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000242256 RN7SL57P RNA, 7SL, cytoplasmic 57, pseudogene 3.6245 0.0000
2 ENSG00000198261 OR5BB1P olfactory receptor family 5 subfamily BB member 1 pseudogene 3.0000 0.0000
3 ENSG00000278438 MIR7849 microRNA 7849 3.0000 0.0000
4 ENSG00000207105 Y RNA 2.8074 0.0000
5 ENSG00000260115 novel transcript, antisense to CDH8 2.8074 0.0000
6 ENSG00000134538 SLCO1B1 solute carrier organic anion transporter family member 1B1 2.5850 0.0002
7 ENSG00000223684 IFNWP18 interferon omega 1 pseudogene 18 2.5850 0.0002
8 ENSG00000226481 ACTR3BP2 ACTR3B pseudogene 2 2.5850 0.0002
9 ENSG00000229692 SOS1-IT1 SOS1 intronic transcript 1 2.5850 0.0000
10 ENSG00000237844 novel transcript 2.5850 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000277672 tubulin, alpha 4a (TUBA4A) pseudogene -1.8562 0.0000
63172 ENSG00000272259 LINC01749 long intergenic non-protein coding RNA 1749 -1.8551 0.0000
63171 ENSG00000279726 novel transcript, antisense to PCDHA5, PCDHA4, PCDHA3, PCDHA2 and PCDHA1 -1.8537 0.0000
63170 ENSG00000198892 SHISA4 shisa family member 4 -1.8535 0.0000
63169 ENSG00000198680 TUSC1 tumor suppressor candidate 1 -1.8530 0.0000
63168 ENSG00000237058 MMEL1-AS1 MMEL1 antisense RNA 1 -1.8529 0.0000
63167 ENSG00000173699 SPATA3 spermatogenesis associated 3 -1.8524 0.0000
63166 ENSG00000238162 pseudogene similar to part of tripartite motif-containing family protein -1.8518 0.0004
63165 ENSG00000223917 pseudogene similar to part of tripartite motif-containing 43 (TRIM43) -1.8518 0.0004
63164 ENSG00000144010 TRIM43B tripartite motif containing 43B -1.8518 0.0004

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...