Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481544

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481544


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M17Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000207394 RNU6-1060P RNA, U6 small nuclear 1060, pseudogene 2.5850 0.0000
2 ENSG00000212100 MIR764 microRNA 764 2.5850 0.0000
3 ENSG00000224907 RPL21P91 ribosomal protein L21 pseudogene 91 2.5850 0.0000
4 ENSG00000230097 ME2P1 malic enzyme 2 pseudogene 1 2.5850 0.0000
5 ENSG00000234233 KCNH1-IT1 KCNH1 intronic transcript 1 2.5850 0.0000
6 ENSG00000255012 OR5M1 olfactory receptor family 5 subfamily M member 1 2.5850 0.0000
7 ENSG00000269966 novel transcript 2.5850 0.0000
8 ENSG00000284299 novel protein 2.5850 0.0000
9 ENSG00000151834 GABRA2 gamma-aminobutyric acid type A receptor subunit alpha2 2.3219 0.0000
10 ENSG00000184611 KCNH7 potassium voltage-gated channel subfamily H member 7 2.3219 0.0004

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000260480 C2orf69P4 chromosome 2 open reading frame 69 pseudogene 4 -1.8000 0.2381
63172 ENSG00000236977 ANKRD44-IT1 ANKRD44 intronic transcript 1 -1.8000 0.2381
63171 ENSG00000236773 novel pseudogene -1.8000 0.2381
63170 ENSG00000236025 coronin, actin binding protein, 1C (CORO1C) pseudogene -1.8000 0.2381
63169 ENSG00000235137 HSP90AB6P heat shock protein 90 alpha family class B member 6, pseudogene -1.8000 0.2381
63168 ENSG00000145439 CBR4 carbonyl reductase 4 -1.7997 0.0024
63167 ENSG00000231609 novel transcript, antisense to EHBP1 -1.7996 0.0000
63166 ENSG00000275146 NA -1.7990 0.2212
63165 ENSG00000273885 NA -1.7990 0.2212
63164 ENSG00000254911 SCARNA9 small Cajal body-specific RNA 9 -1.7990 0.2212

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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