Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481545

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481545


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M18Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000251553 DDX18P4 DEAD-box helicase 18 pseudogene 4 2.6055 0.0000
2 ENSG00000225027 IFNWP4 interferon omega 1 pseudogene 4 2.5850 0.0000
3 ENSG00000221808 MIR1256 microRNA 1256 2.3219 0.0000
5 ENSG00000241295 ZBTB20-AS2 ZBTB20 antisense RNA 2 2.3219 0.0007
6 ENSG00000242197 ribosomal protein L37 (RPL37) pseudogene 2.3219 0.0000
7 ENSG00000248733 novel transcript 2.3219 0.0007
8 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 2.2452 0.0000
9 ENSG00000257528 KRT8P19 keratin 8 pseudogene 19 2.1962 0.0000
10 ENSG00000251805 NA 2.1610 0.0000
63164 ENSG00000172116 CD8B CD8b molecule -1.7692 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000271614 ATP2B1-AS1 ATP2B1 antisense RNA 1 -1.7725 0.0000
63172 ENSG00000147364 FBXO25 F-box protein 25 -1.7721 0.0000
63171 ENSG00000157060 SHCBP1L SHC binding and spindle associated 1 like -1.7717 0.0000
63170 ENSG00000230212 novel transcript -1.7711 0.0000
63169 ENSG00000278390 novel transcript, antisense to KBTBD7 and MTRF1 -1.7705 0.0000
63168 ENSG00000207123 Y RNA -1.7705 0.0168
63167 ENSG00000271333 novel pseudogene -1.7694 0.0383
63166 ENSG00000187773 DIPK1C divergent protein kinase domain 1C -1.7692 0.0000
63165 ENSG00000199458 RNU4-35P RNA, U4 small nuclear 35, pseudogene -1.7692 0.0615
63164 ENSG00000172116 CD8B CD8b molecule -1.7692 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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