Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481546

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481546


Profile download
7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M19Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000206998 Y RNA 2.0544 0.0000
2 ENSG00000251340 MTCYBP35 MT-CYB pseudogene 35 2.0120 0.0000
3 ENSG00000173467 AGR3 anterior gradient 3, protein disulphide isomerase family member 2.0000 0.0090
4 ENSG00000257851 HNRNPA3P10 heterogeneous nuclear ribonucleoprotein A3 pseudogene 10 2.0000 0.0090
5 ENSG00000263755 RN7SL498P RNA, 7SL, cytoplasmic 498, pseudogene 2.0000 0.0090
6 ENSG00000267557 novel transcript, antisense to ANKRD27 2.0000 0.0000
7 ENSG00000275632 novel transcript 2.0000 0.0090
8 ENSG00000278719 MCM8-AS1 MCM8 antisense RNA 1 2.0000 0.0090
9 ENSG00000248851 fibroblast growth factor binding protein 1 (FGFBP1) pseudogene 1.6667 0.0000
10 ENSG00000021355 SERPINB1 serpin family B member 1 1.5850 0.0432

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000077800 FKBP6 FKBP prolyl isomerase 6 -1.4853 0.0000
63172 ENSG00000278703 novel transcript -1.4847 0.0000
63171 ENSG00000148384 INPP5E inositol polyphosphate-5-phosphatase E -1.4837 0.0000
63170 ENSG00000280169 novel transcript, antisense to GGACT -1.4832 0.0001
63169 ENSG00000277383 novel transcript, antisense to GLTSCR1 -1.4832 0.0001
63168 ENSG00000234354 RPS26P47 ribosomal protein S26 pseudogene 47 -1.4832 0.0001
63167 ENSG00000224356 novel transcript -1.4832 0.0001
63166 ENSG00000219438 TAFA5 TAFA chemokine like family member 5 -1.4811 0.0004
63165 ENSG00000204950 LRRC10B leucine rich repeat containing 10B -1.4800 0.0000
63164 ENSG00000241570 PAQR9-AS1 PAQR9 antisense RNA 1 -1.4793 0.0126

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...