Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481547

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481547


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M20Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000242256 RN7SL57P RNA, 7SL, cytoplasmic 57, pseudogene 2.3219 0.0011
2 ENSG00000229944 EIF4EP2 eukaryotic translation initiation factor 4E pseudogene 2 2.0000 0.0000
3 ENSG00000273203 novel transcript 2.0000 0.0000
4 ENSG00000124193 SRSF6 serine and arginine rich splicing factor 6 1.8931 0.0000
5 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 1.7955 0.0000
6 ENSG00000147724 FAM135B family with sequence similarity 135 member B 1.7143 0.0000
7 ENSG00000020922 MRE11 MRE11 homolog, double strand break repair nuclease 1.5850 0.0011
8 ENSG00000038219 BOD1L1 biorientation of chromosomes in cell division 1 like 1 1.5850 0.0011
9 ENSG00000075711 DLG1 discs large MAGUK scaffold protein 1 1.5850 0.0331
10 ENSG00000100234 TIMP3 TIMP metallopeptidase inhibitor 3 1.5850 0.0331

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000267573 KRT8P5 keratin 8 pseudogene 5 -1.4680 0.3793
63172 ENSG00000259525 GCSHP2 glycine cleavage system protein H pseudogene 2 -1.4680 0.3793
63171 ENSG00000257113 DnaJ (Hsp40) homolog, subfamily C, member 1 (DNAJC1) pseudogene -1.4680 0.3793
63170 ENSG00000250485 EXOC7P1 exocyst complex component 7 pseudogene 1 -1.4680 0.3793
63169 ENSG00000249368 pseudogene similar to part of polymerase (DNA directed), beta (POLB) -1.4680 0.0592
63168 ENSG00000248205 H3P17 H3 histone pseudogene 17 -1.4680 0.3793
63167 ENSG00000230698 novel transcript -1.4680 0.3793
63166 ENSG00000228361 novel transcript -1.4680 0.3793
63164 ENSG00000219529 ribosomal protein S20 (RPS20) pseudogene -1.4680 0.0097
10 ENSG00000100234 TIMP3 TIMP metallopeptidase inhibitor 3 1.5850 0.0331

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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