Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481548

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481548


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M21Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000137575 SDCBP syndecan binding protein 2.0000 0.0027
2 ENSG00000152443 ZNF776 zinc finger protein 776 2.0000 0.0027
3 ENSG00000207785 MIR500A microRNA 500a 2.0000 0.0027
4 ENSG00000207970 MIR660 microRNA 660 2.0000 0.0000
5 ENSG00000208015 MIR362 microRNA 362 2.0000 0.0027
6 ENSG00000211538 MIR501 microRNA 501 2.0000 0.0027
7 ENSG00000226989 chromosome 7 open reading frame 44 (C7orf44) pseudogene 2.0000 0.0000
8 ENSG00000239057 MIR500B microRNA 500b 2.0000 0.0027
9 ENSG00000242256 RN7SL57P RNA, 7SL, cytoplasmic 57, pseudogene 2.0000 0.0000
10 ENSG00000261077 ribosomal protein L18a (RPL18A) pseudogene 2.0000 0.0027

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000125900 SIRPD signal regulatory protein delta -1.5850 1.0000
63172 ENSG00000125804 FAM182A family with sequence similarity 182 member A -1.5850 0.6103
63171 ENSG00000125611 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 -1.5850 0.0996
63170 ENSG00000122043 LINC00544 long intergenic non-protein coding RNA 544 -1.5850 1.0000
63169 ENSG00000117519 CNN3 calponin 3 -1.5850 0.0013
63168 ENSG00000117148 ACTL8 actin like 8 -1.5850 1.0000
63167 ENSG00000113369 ARRDC3 arrestin domain containing 3 -1.5850 1.0000
63166 ENSG00000111817 DSE dermatan sulfate epimerase -1.5850 1.0000
63165 ENSG00000109132 PHOX2B paired like homeobox 2B -1.5850 0.0402
63164 ENSG00000109046 WSB1 WD repeat and SOCS box containing 1 -1.5850 0.1619

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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