Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481549

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481549


Profile download
7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M22Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000199529 RNU6-462P RNA, U6 small nuclear 462, pseudogene 3.0000 0.0000
2 ENSG00000273090 novel transcript 2.8617 0.0000
3 ENSG00000233009 NALCN-AS1 NALCN antisense RNA 1 2.8074 0.0000
4 ENSG00000277039 Metazoan signal recognition particle RNA 2.8074 0.0000
5 ENSG00000138814 PPP3CA protein phosphatase 3 catalytic subunit alpha 2.5850 0.0000
6 ENSG00000199911 Y RNA 2.5850 0.0000
7 ENSG00000204460 LINC01854 long intergenic non-protein coding RNA 1854 2.5850 0.0000
8 ENSG00000230519 HMGB1P49 high mobility group box 1 pseudogene 49 2.5850 0.0000
9 ENSG00000232054 NPM1P34 nucleophosmin 1 pseudogene 34 2.5850 0.0000
10 ENSG00000241409 novel transcript 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000222486 RNU6-77P RNA, U6 small nuclear 77, pseudogene -2.0000 1.0000
63172 ENSG00000220581 VN1R12P vomeronasal 1 receptor 12, pseudogene -2.0000 1.0000
63171 ENSG00000220240 pseudogene similar to part of Tec protein-tyrosine kinase (TEC) -2.0000 1.0000
63170 ENSG00000218793 S-adenosylmethionine decarboxylase 1 (AMD1) pseudogene -2.0000 1.0000
63169 ENSG00000218698 ST13P16 ST13, Hsp70 interacting protein pseudogene 16 -2.0000 1.0000
63168 ENSG00000217769 suppression of tumorigenicity 13, Hsp70-interacting protein (ST13) pseudogene -2.0000 1.0000
63167 ENSG00000216480 60S Ribosomal protein L21 (RPL21) pseudogene -2.0000 1.0000
63166 ENSG00000215512 ankyrin repeat domain 30A (ANKRD30A) pseudogene -2.0000 0.3988
63165 ENSG00000214330 ABCD1P5 ATP binding cassette subfamily D member 1 pseudogene 5 -2.0000 0.2515
63164 ENSG00000213939 ribosomal protein S12 (RPS12) pseudogene -2.0000 0.2515

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...