Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481550

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481550


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M23Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000231861 OR5K2 olfactory receptor family 5 subfamily K member 2 2.9037 0.0000
2 ENSG00000214978 GSG1L2 GSG1 like 2 2.5850 0.0000
3 ENSG00000226089 novel transcript, sense intronic to FAM46A 2.5850 0.0000
4 ENSG00000231601 novel transcript 2.5850 0.0000
5 ENSG00000235020 novel transcript 2.5850 0.0000
6 ENSG00000242428 CFAP20DC-AS1 CFAP20DC antisense RNA 1 2.5850 0.0000
8 ENSG00000270852 novel pseudogene 2.5850 0.0000
9 ENSG00000272563 novel transcript 2.5850 0.0000
10 ENSG00000273784 novel transcript 2.5850 0.0000
63164 ENSG00000088538 DOCK3 dedicator of cytokinesis 3 -2.0000 0.6103

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000134757 DSG3 desmoglein 3 -2.0000 1.0000
63172 ENSG00000124490 CRISP2 cysteine rich secretory protein 2 -2.0000 1.0000
63171 ENSG00000120688 WBP4 WW domain binding protein 4 -2.0000 1.0000
63170 ENSG00000118785 SPP1 secreted phosphoprotein 1 -2.0000 1.0000
63169 ENSG00000116874 WARS2 tryptophanyl tRNA synthetase 2, mitochondrial -2.0000 0.0024
63168 ENSG00000107731 UNC5B unc-5 netrin receptor B -2.0000 0.6103
63167 ENSG00000102239 BRS3 bombesin receptor subtype 3 -2.0000 1.0000
63166 ENSG00000101958 GLRA2 glycine receptor alpha 2 -2.0000 1.0000
63165 ENSG00000101441 CST4 cystatin S -2.0000 1.0000
63164 ENSG00000088538 DOCK3 dedicator of cytokinesis 3 -2.0000 0.6103

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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