Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481551

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481551


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M24Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000278480 ZBTB2P1 ZBTB2 pseudogene 1 3.0000 0.0000
2 ENSG00000226783 TLK1P1 tousled like kinase 1 pseudogene 1 2.3219 0.0007
3 ENSG00000133636 NTS neurotensin 2.0000 0.0044
4 ENSG00000203864 LINC02868 long intergenic non-protein coding RNA 2868 2.0000 0.0044
5 ENSG00000211706 TRBV6-1 T cell receptor beta variable 6-1 2.0000 0.0044
6 ENSG00000230376 MEMO1P4 mediator of cell motility 1 pseudogene 4 2.0000 0.0000
7 ENSG00000230948 AURKBP1 aurora kinase B pseudogene 1 2.0000 0.0044
8 ENSG00000235386 pseudogene similar to part of microfibrillar-associated protein 2 (MFAP2) 2.0000 0.0044
9 ENSG00000236187 GJA6P gap junction protein alpha 6, pseudogene 2.0000 0.0044
10 ENSG00000241744 ribosomal protein S6 (RPS6) pseudogene 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000153561 RMND5A required for meiotic nuclear division 5 homolog A -1.5850 1.0000
63172 ENSG00000152611 CAPSL calcyphosine like -1.5850 1.0000
63171 ENSG00000151611 MMAA metabolism of cobalamin associated A -1.5850 1.0000
63170 ENSG00000150753 CCT5 chaperonin containing TCP1 subunit 5 -1.5850 0.3685
63169 ENSG00000149926 TLCD3B TLC domain containing 3B -1.5850 0.3685
63168 ENSG00000149600 COMMD7 COMM domain containing 7 -1.5850 0.3840
63167 ENSG00000148672 GLUD1 glutamate dehydrogenase 1 -1.5850 1.0000
63166 ENSG00000142207 URB1 URB1 ribosome biogenesis homolog -1.5850 0.5982
63165 ENSG00000141971 MVB12A multivesicular body subunit 12A -1.5850 0.5982
63164 ENSG00000140990 NDUFB10 NADH:ubiquinone oxidoreductase subunit B10 -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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