Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481552

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481552


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7010000000000000000000-771Sequence Read ArchiveSRP074598SRP074598_M25Single-cell DNA methylome sequencing of human preimplantation embryosMethylome4-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000206998 Y RNA 2.8074 0.0000
2 ENSG00000264371 MIR4425 microRNA 4425 2.3219 0.0000
3 ENSG00000205097 FRG2 FSHD region gene 2 2.1380 0.0000
4 ENSG00000224807 DUX4L9 double homeobox 4 like 9 (pseudogene) 2.1380 0.0000
5 ENSG00000152413 HOMER1 homer scaffold protein 1 2.0000 0.0049
6 ENSG00000201659 RNU12-2P RNA, U12 small nuclear 2, pseudogene 2.0000 0.0049
7 ENSG00000263870 RAP1A, member of RAS oncogene family (RAP1A) pseudogene 2.0000 0.0000
8 ENSG00000270624 ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) pseudogene 2.0000 0.0000
9 ENSG00000278589 ZACNP1 zinc activated ion channel pseudogene 1 2.0000 0.0049
10 ENSG00000136770 DNAJC1 DnaJ heat shock protein family (Hsp40) member C1 1.8814 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000121064 SCPEP1 serine carboxypeptidase 1 -1.5850 0.5982
63172 ENSG00000119147 ECRG4 ECRG4 augurin precursor -1.5850 0.5982
63171 ENSG00000118946 PCDH17 protocadherin 17 -1.5850 0.0247
63170 ENSG00000118231 CRYGD crystallin gamma D -1.5850 0.0247
63169 ENSG00000117632 STMN1 stathmin 1 -1.5850 1.0000
63168 ENSG00000116544 DLGAP3 DLG associated protein 3 -1.5850 0.2296
63167 ENSG00000115840 SLC25A12 solute carrier family 25 member 12 -1.5850 0.5982
63166 ENSG00000115593 SMYD1 SET and MYND domain containing 1 -1.5850 1.0000
63165 ENSG00000114346 ECT2 epithelial cell transforming 2 -1.5850 0.5982
63164 ENSG00000112592 TBP TATA-box binding protein -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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