Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481553

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481553


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7180101000000000000000-755Sequence Read ArchiveSRP074598SRP074598_M26Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeGV oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000237510 GPAT2P1 glycerol-3-phosphate acyltransferase 2 pseudogene 1 2.5850 0.0000
2 ENSG00000266692 NA 2.5615 0.0000
3 ENSG00000230071 RPL4P6 ribosomal protein L4 pseudogene 6 2.3219 0.0000
4 ENSG00000232518 novel transcript 2.3219 0.0000
5 ENSG00000235940 MTND1P21 MT-ND1 pseudogene 21 2.3219 0.0025
6 ENSG00000243055 GK-AS1 GK antisense RNA 1 2.3219 0.0025
7 ENSG00000244372 RN7SL423P RNA, 7SL, cytoplasmic 423, pseudogene 2.3219 0.0000
8 ENSG00000248282 MTCYBP44 MT-CYB pseudogene 44 2.3219 0.0000
9 ENSG00000254864 novel transcript 2.3219 0.0025
10 ENSG00000257074 RPL29P33 ribosomal protein L29 pseudogene 33 2.3219 0.0025

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000280372 TEC -1.5850 1.0000
63172 ENSG00000280124 novel transcript -1.5850 1.0000
63171 ENSG00000279796 TEC -1.5850 0.2127
63170 ENSG00000279525 TEC -1.5850 1.0000
63169 ENSG00000279493 novel protein, similar to DNA (cytosine-5-)-methyltransferase 3-like DNMT3L -1.5850 0.0124
63168 ENSG00000279170 TSTD3 thiosulfate sulfurtransferase like domain containing 3 -1.5850 1.0000
63167 ENSG00000278528 phospholipase A2, group X (PLA2G10) pseudogene -1.5850 0.5816
63166 ENSG00000278181 G protein-coupled receptor 157 (GPR157) pseudogene -1.5850 1.0000
63165 ENSG00000277509 zinc finger protein 347 (ZNF347) pseudogene -1.5850 0.5816
63164 ENSG00000277397 carnitine palmitoyltransferase 2 (CPT2) pseudogene -1.5850 0.5816

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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