Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481554

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481554


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M27Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000271833 novel transcript 3.0000 0.0000
2 ENSG00000114446 IFT57 intraflagellar transport 57 2.3219 0.0019
3 ENSG00000137501 SYTL2 synaptotagmin like 2 2.3219 0.0000
4 ENSG00000143033 MTF2 metal response element binding transcription factor 2 2.3219 0.0000
5 ENSG00000230300 STARD13-IT1 STARD13 intronic transcript 1 2.3219 0.0019
6 ENSG00000252498 RNU6-1016P RNA, U6 small nuclear 1016, pseudogene 2.3219 0.0019
7 ENSG00000275268 U7 small nuclear RNA 2.3219 0.0019
8 ENSG00000280092 novel transcript 2.3219 0.0000
9 ENSG00000226625 RBM17P1 RNA binding motif protein 17 pseudogene 1 2.2549 0.0000
10 ENSG00000265694 MIR4774 microRNA 4774 2.2146 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000253224 PGAM5P1 PGAM family member 5, mitochondrial serine/threonine protein phosphatase pseudogene 1 -1.5850 0.1350
63172 ENSG00000253190 novel transcript -1.5850 0.3551
63171 ENSG00000253087 RNU6-1174P RNA, U6 small nuclear 1174, pseudogene -1.5850 0.3551
63170 ENSG00000252794 RN7SKP60 RN7SK pseudogene 60 -1.5850 1.0000
63169 ENSG00000252718 RNU6-612P RNA, U6 small nuclear 612, pseudogene -1.5850 1.0000
63168 ENSG00000252655 Y RNA -1.5850 1.0000
63167 ENSG00000252622 RNU6-881P RNA, U6 small nuclear 881, pseudogene -1.5850 0.1350
63166 ENSG00000252459 NA -1.5850 0.0000
63165 ENSG00000252457 RNU7-65P RNA, U7 small nuclear 65 pseudogene -1.5850 1.0000
63164 ENSG00000252347 RNU6-1046P RNA, U6 small nuclear 1046, pseudogene -1.5850 0.3551

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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