Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481555

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481555


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M28Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000233363 novel transcript 2.8074 0.0000
2 ENSG00000243593 LINC02049 long intergenic non-protein coding RNA 2049 2.5850 0.0000
3 ENSG00000248133 MTND4LP22 MT-ND4L pseudogene 22 2.5850 0.0000
4 ENSG00000248654 MTCO3P44 MT-CO3 pseudogene 44 2.5850 0.0000
5 ENSG00000250050 MTND4P9 MT-ND4 pseudogene 9 2.5850 0.0000
6 ENSG00000251353 MTND3P5 MT-ND3 pseudogene 5 2.5850 0.0000
7 ENSG00000202478 RNU6-81P RNA, U6 small nuclear 81, pseudogene 2.3219 0.0000
8 ENSG00000214313 AZGP1P1 AZGP1 pseudogene 1 2.3219 0.0000
9 ENSG00000215032 GNL3LP1 G protein nucleolar 3 like pseudogene 1 2.3219 0.0000
10 ENSG00000226722 LINC00424 long intergenic non-protein coding RNA 424 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000264426 MIR4283-1 microRNA 4283-1 -1.5850 1.0000
63172 ENSG00000264419 MIR548AC microRNA 548ac -1.5850 1.0000
63171 ENSG00000264402 MIR548AL microRNA 548al -1.5850 1.0000
63170 ENSG00000264247 LINC00909 long intergenic non-protein coding RNA 909 -1.5850 1.0000
63169 ENSG00000264112 novel transcript -1.5850 1.0000
63168 ENSG00000263797 novel transcript, antisense to ARHGAP28 -1.5850 1.0000
63167 ENSG00000263716 SLC25A51P2 SLC25A51 pseudogene 2 -1.5850 1.0000
63166 ENSG00000263712 MIR4639 microRNA 4639 -1.5850 1.0000
63165 ENSG00000263615 MIR4306 microRNA 4306 -1.5850 1.0000
63164 ENSG00000263575 MIR4665 microRNA 4665 -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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