Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481556

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481556


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M29Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000259019 EIF4BP1 eukaryotic translation initiation factor 4B pseudogene 1 2.8074 0.0000
2 ENSG00000280033 TEC 2.8074 0.0000
3 ENSG00000261126 RBFADN RBFA downstream neighbor 2.7398 0.0000
4 ENSG00000133678 TMEM254 transmembrane protein 254 2.5850 0.0000
5 ENSG00000137558 PI15 peptidase inhibitor 15 2.5850 0.0000
6 ENSG00000199024 MIR103A2 microRNA 103a-2 2.5850 0.0000
7 ENSG00000225460 ubiquitin-conjugating enzyme E2 pseudogene 2.5850 0.0000
8 ENSG00000226411 phosphorylase kinase, gamma 1 (muscle) (PHKG1) pseudogene 2.5850 0.0000
9 ENSG00000230091 TMEM254-AS1 TMEM254 antisense RNA 1 2.5850 0.0000
10 ENSG00000230305 postmeiotic segregation increased 2-like 5 (PMS2L5) pseudogene 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000273644 von Hippel-Lindau binding protein 1 (VBP1) pseudogene -1.8266 0.1165
63172 ENSG00000188641 DPYD dihydropyrimidine dehydrogenase -1.8264 0.0348
63171 ENSG00000207045 RNU6-532P RNA, U6 small nuclear 532, pseudogene -1.8263 0.2499
63170 ENSG00000237515 SHISA9 shisa family member 9 -1.8263 0.2292
63169 ENSG00000183807 FAM162B family with sequence similarity 162 member B -1.8262 1.0000
63168 ENSG00000196366 C9orf163 chromosome 9 open reading frame 163 -1.8258 0.0001
63167 ENSG00000177770 CDKN2AIPNLP1 CDKN2A interacting protein N-terminal like pseudogene 1 -1.8244 0.4183
63166 ENSG00000067182 TNFRSF1A TNF receptor superfamily member 1A -1.8237 0.0072
63165 ENSG00000214732 Uncharacterized protein 114841037 -1.8234 0.2682
63164 ENSG00000232001 novel transcript -1.8231 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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