Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481557

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481557


Profile download
5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M30Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
2 ENSG00000258401 ATP5MC2P2 ATP synthase membrane subunit c locus 2 pseudogene 2 2.8074 0.0000
3 ENSG00000232349 YBX1P7 Y-box binding protein 1 pseudogene 7 2.6591 0.0000
4 ENSG00000057468 MSH4 mutS homolog 4 2.5850 0.0000
5 ENSG00000163510 CWC22 CWC22 spliceosome associated protein homolog 2.5850 0.0000
6 ENSG00000165805 C12orf50 chromosome 12 open reading frame 50 2.5850 0.0000
7 ENSG00000201364 RN7SKP37 RN7SK pseudogene 37 2.5850 0.0000
8 ENSG00000229242 novel transcript 2.5850 0.0000
9 ENSG00000243033 GAPDHP47 glyceraldehyde 3 phosphate dehydrogenase pseudogene 47 2.5850 0.0000
10 ENSG00000244056 RN7SL417P RNA, 7SL, cytoplasmic 417, pseudogene 2.5850 0.0000
63164 ENSG00000227199 ST7-AS1 ST7 antisense RNA 1 -1.6877 0.5113

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000284439 TAF11L3 TATA-box binding protein associated factor 11 like 3 -1.6884 0.1080
63172 ENSG00000264168 MTND1P15 MT-ND1 pseudogene 15 -1.6882 0.5496
63171 ENSG00000243655 novel transcript, antisense to MTRNR2L1 -1.6882 0.5496
63170 ENSG00000277583 NA -1.6877 0.5113
63169 ENSG00000276100 NA -1.6877 0.5113
63168 ENSG00000275359 NA -1.6877 0.5113
63167 ENSG00000274606 NA -1.6877 0.5113
63166 ENSG00000273596 NA -1.6877 0.5113
63165 ENSG00000273571 NA -1.6877 0.5113
63164 ENSG00000227199 ST7-AS1 ST7 antisense RNA 1 -1.6877 0.5113

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...