Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481558

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481558


Profile download
7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M31Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000257239 novel transcript 2.8074 0.0000
2 ENSG00000250954 novel transcript 2.5850 0.0001
3 ENSG00000251261 OR7H2P olfactory receptor family 7 subfamily H member 2 pseudogene 2.5850 0.0001
4 ENSG00000267743 uncharacterized LOC105372143 2.5850 0.0000
5 ENSG00000276123 Metazoan signal recognition particle RNA 2.5850 0.0000
6 ENSG00000236512 ribosomal protein L29 (RPL29) pseudogene 2.4637 0.0000
7 ENSG00000273209 novel transcript 2.4534 0.0000
8 ENSG00000241054 novel transcript 2.3900 0.0000
9 ENSG00000168172 HOOK3 hook microtubule tethering protein 3 2.3350 0.0000
10 ENSG00000254673 novel protein 2.3350 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000110925 CSRNP2 cysteine and serine rich nuclear protein 2 -1.6957 0.0000
63172 ENSG00000143032 BARHL2 BarH like homeobox 2 -1.6957 0.0000
63171 ENSG00000051108 HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 -1.6939 0.0000
63170 ENSG00000272455 MRPL20-DT MRPL20 divergent transcript -1.6934 0.0000
63169 ENSG00000197498 RPF2 ribosome production factor 2 homolog -1.6933 0.0012
63168 ENSG00000162931 TRIM17 tripartite motif containing 17 -1.6928 0.0000
63167 ENSG00000187554 TLR5 toll like receptor 5 -1.6926 0.0000
63166 ENSG00000258315 C17orf49 chromosome 17 open reading frame 49 -1.6920 0.0000
63165 ENSG00000241560 ZBTB20-AS1 ZBTB20 antisense RNA 1 -1.6915 0.0000
63164 ENSG00000229782 novel transcript -1.6907 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...