Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481560

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481560


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M33Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000236909 OR2P1P olfactory receptor family 2 subfamily P member 1 pseudogene 2.5850 0.0000
3 ENSG00000232387 SKA2P1 spindle and kinetochore associated complex subunit 2 pseudogene 1 2.5192 0.0000
4 ENSG00000213478 CFL1P2 cofilin 1 pseudogene 2 2.4534 0.0000
5 ENSG00000215546 DKKL1P1 DKKL1 pseudogene 1 2.3764 0.0000
6 ENSG00000105708 ZNF14 zinc finger protein 14 2.3219 0.0000
7 ENSG00000117586 TNFSF4 TNF superfamily member 4 2.3219 0.0001
8 ENSG00000164266 SPINK1 serine peptidase inhibitor Kazal type 1 2.3219 0.0001
9 ENSG00000201176 RNU6-853P RNA, U6 small nuclear 853, pseudogene 2.3219 0.0001
10 ENSG00000207260 RNU6-35P RNA, U6 small nuclear 35, pseudogene 2.3219 0.0001
63164 ENSG00000210741 MIR196A1 microRNA 196a-1 -1.6272 0.0130

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000272543 MIR4787 microRNA 4787 -1.6319 0.0157
63172 ENSG00000278171 interleukin 9 receptor (IL9R) pseudogene -1.6319 0.0456
63171 ENSG00000130643 CALY calcyon neuron specific vesicular protein -1.6317 0.0000
63170 ENSG00000257086 novel transcript -1.6315 0.0000
63169 ENSG00000100632 ERH ERH mRNA splicing and mitosis factor -1.6297 0.1207
63168 ENSG00000203880 PCMTD2 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 -1.6296 0.0000
63167 ENSG00000139343 SNRPF small nuclear ribonucleoprotein polypeptide F -1.6290 0.0001
63166 ENSG00000280607 novel transcript -1.6276 0.0000
63165 ENSG00000233922 LINC01694 long intergenic non-protein coding RNA 1694 -1.6275 0.0736
63164 ENSG00000210741 MIR196A1 microRNA 196a-1 -1.6272 0.0130

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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