Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481562

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481562


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M35Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000259122 TVP23BP1 TVP23B pseudogene 1 2.8074 0.0000
2 ENSG00000118518 RNF146 ring finger protein 146 2.5850 0.0001
3 ENSG00000154839 SKA1 spindle and kinetochore associated complex subunit 1 2.5850 0.0000
4 ENSG00000229473 RGS17P1 regulator of G protein signaling 17 pseudogene 1 2.5850 0.0001
5 ENSG00000234891 novel transcript 2.5850 0.0000
6 ENSG00000263526 MIR378G microRNA 378g 2.5850 0.0001
7 ENSG00000275371 novel transcript, antisense to GDPD3 2.5850 0.0000
8 ENSG00000267264 vomeronasal receptor pseudogene 2.5646 0.0000
9 ENSG00000269846 novel transcript, antisense to RBL1 2.4089 0.0000
10 ENSG00000265407 MIR4324 microRNA 4324 2.4052 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000076043 REXO2 RNA exonuclease 2 -1.9596 0.0000
63172 ENSG00000132975 GPR12 G protein-coupled receptor 12 -1.9588 0.0000
63171 ENSG00000253171 novel transcript -1.9581 0.0000
63170 ENSG00000223709 TRIM64EP tripartite motif containing 64E, pseudogene -1.9580 0.0000
63169 ENSG00000140319 SRP14 signal recognition particle 14 -1.9579 0.0000
63168 ENSG00000120055 C10orf95 chromosome 10 open reading frame 95 -1.9575 0.0000
63167 ENSG00000249961 TERB1 telomere repeat binding bouquet formation protein 1 -1.9572 0.0000
63166 ENSG00000270896 mitochondrial coiled-coil domain 1 (MCCD1) pseudogene -1.9569 0.0945
63165 ENSG00000261270 novel transcript, sense intronic to HERPUD1 -1.9568 0.0000
63164 ENSG00000213107 AHCYP5 adenosylhomocysteinase pseudogene 5 -1.9562 0.0354

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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