Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481564

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481564


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M37Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000128645 HOXD1 homeobox D1 2.8074 0.0000
2 ENSG00000207223 Y RNA 2.8074 0.0000
3 ENSG00000216101 MIR877 microRNA 877 2.8074 0.0000
4 ENSG00000253593 novel transcript 2.8074 0.0000
5 ENSG00000278873 uncharacterized LOC100133319 2.5850 0.0000
6 ENSG00000232252 novel transcript 2.5646 0.0000
7 ENSG00000202141 Y RNA 2.4110 0.0000
8 ENSG00000102158 MAGT1 magnesium transporter 1 2.3219 0.0000
9 ENSG00000163116 STPG2 sperm tail PG-rich repeat containing 2 2.3219 0.0002
10 ENSG00000174928 C3orf33 chromosome 3 open reading frame 33 2.3219 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000162552 WNT4 Wnt family member 4 -1.8383 0.0000
63172 ENSG00000101126 ADNP activity dependent neuroprotector homeobox -1.8383 0.0000
63171 ENSG00000174996 KLC2 kinesin light chain 2 -1.8382 0.0000
63170 ENSG00000234589 ribosomal protein L13a (RPL13A) pseudogene -1.8368 0.0000
63169 ENSG00000100650 SRSF5 serine and arginine rich splicing factor 5 -1.8363 0.0000
63168 ENSG00000251550 COX assembly mitochondrial protein homolog (S. cerevisiae) (CMC1) pseudogene -1.8356 0.0006
63167 ENSG00000197591 OR11L1 olfactory receptor family 11 subfamily L member 1 -1.8343 0.0291
63166 ENSG00000135443 KRT85 keratin 85 -1.8342 0.0000
63165 ENSG00000258957 novel transcript -1.8342 0.0025
63164 ENSG00000255316 MTND6P25 MT-ND6 pseudogene 25 -1.8340 0.3912

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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