Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481565

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481565


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M38Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000227602 novel transcript 2.5850 0.0000
2 ENSG00000160229 ZNF66 zinc finger protein 66 2.3219 0.0000
3 ENSG00000163104 SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 2.3219 0.0000
4 ENSG00000234382 acyl-CoA synthetase medium-chain family member 1 (ACSM1) pseudogene 2.3219 0.0000
5 ENSG00000246541 novel transcript 2.3219 0.0000
6 ENSG00000253414 novel transcript 2.3219 0.0000
7 ENSG00000274450 NA 2.3219 0.0000
8 ENSG00000232828 novel transcript 2.1230 0.0000
9 ENSG00000005471 ABCB4 ATP binding cassette subfamily B member 4 2.0000 0.0000
10 ENSG00000092140 G2E3 G2/M-phase specific E3 ubiquitin protein ligase 2.0000 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000248787 novel transcript -1.5850 1.0000
63172 ENSG00000248711 THUMPD3P1 THUMP domain containing 3 pseudogene 1 -1.5850 1.0000
63171 ENSG00000248334 WHAMMP2 WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 2 -1.5850 0.2751
63170 ENSG00000248333 CDK11B cyclin dependent kinase 11B -1.5850 1.0000
63169 ENSG00000247853 novel transcript, antisense to CHD4 -1.5850 1.0000
63168 ENSG00000246820 RIC3-DT RIC3 divergent transcript -1.5850 0.1786
63167 ENSG00000246308 novel transcript, antisense to ZBED5 -1.5850 1.0000
63166 ENSG00000245311 ARNTL2-AS1 ARNTL2 antisense RNA 1 -1.5850 1.0000
63165 ENSG00000244738 novel transcript -1.5850 0.6268
63164 ENSG00000244196 PPIAP15 peptidylprolyl isomerase A pseudogene 15 -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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