Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481566

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481566


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M39Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000258039 novel transcript, antisense & intronic to ANKS1B 2.8074 0.0000
2 ENSG00000276667 CDC-like kinase 3 (CLK3) pseudogene 2.7582 0.0000
3 ENSG00000235064 SLC25A5P2 solute carrier family 25 member 5 pseudogene 2 2.7468 0.0000
4 ENSG00000077498 TYR tyrosinase 2.5850 0.0007
5 ENSG00000187026 KRTAP21-2 keratin associated protein 21-2 2.5850 0.0007
6 ENSG00000213754 KPNA4P1 KPNA4 pseudogene 1 2.5850 0.0007
7 ENSG00000226358 KRT8P38 keratin 8 pseudogene 38 2.5850 0.0000
8 ENSG00000236400 KRTAP21-4P keratin associated protein 21-4, pseudogene 2.5850 0.0007
9 ENSG00000237139 RPS26P41 ribosomal protein S26 pseudogene 41 2.5850 0.0007
10 ENSG00000257823 necdin homolog (mouse) (NDN) pseudogene 2.5850 0.0007

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000228626 novel pseudogene -1.8889 0.0000
63172 ENSG00000164746 C7orf57 chromosome 7 open reading frame 57 -1.8885 0.0001
63171 ENSG00000204671 IL31 interleukin 31 -1.8883 0.0000
63170 ENSG00000101400 SNTA1 syntrophin alpha 1 -1.8882 0.0000
63169 ENSG00000140274 DUOXA2 dual oxidase maturation factor 2 -1.8879 0.0000
63168 ENSG00000276407 novel transcript -1.8870 0.0074
63167 ENSG00000212146 RNU6-910P RNA, U6 small nuclear 910, pseudogene -1.8868 0.0003
63166 ENSG00000284592 novel SLAM family member pseudogene -1.8863 0.0000
63165 ENSG00000241261 RPL17P19 ribosomal protein L17 pseudogene 19 -1.8859 0.0000
10 ENSG00000257823 necdin homolog (mouse) (NDN) pseudogene 2.5850 0.0007

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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