Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481567

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481567


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M40Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000206998 Y RNA 2.7279 0.0000
2 ENSG00000199598 RNU6-859P RNA, U6 small nuclear 859, pseudogene 2.5850 0.0000
3 ENSG00000221910 OR2F2 olfactory receptor family 2 subfamily F member 2 2.5850 0.0000
4 ENSG00000243593 LINC02049 long intergenic non-protein coding RNA 2049 2.5850 0.0000
5 ENSG00000283653 novel ovomucoid-like pseudogene 2.5850 0.0000
6 ENSG00000054983 GALC galactosylceramidase 2.3658 0.0000
7 ENSG00000177570 SAMD12 sterile alpha motif domain containing 12 2.3219 0.0000
8 ENSG00000213279 novel transcript 2.3219 0.0000
9 ENSG00000213370 RANP6 RAN pseudogene 6 2.3219 0.0000
10 ENSG00000224394 GPC6-AS2 GPC6 antisense RNA 2 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000270781 ribosomal protein L37 (RPL37) pseudogene -1.5850 1.0000
63172 ENSG00000270765 GAS2L2 growth arrest specific 2 like 2 -1.5850 1.0000
63171 ENSG00000270725 novel transcript -1.5850 1.0000
63170 ENSG00000270719 anaphase promoting complex subunit 13 (ANAPC13) pseudogene -1.5850 1.0000
63169 ENSG00000270606 PPIAP52 peptidylprolyl isomerase A pseudogene 52 -1.5850 1.0000
63168 ENSG00000270562 novel transcript -1.5850 1.0000
63167 ENSG00000270409 chromosome 9 open reading frame 64 (C9orf64) pseudogene -1.5850 1.0000
63166 ENSG00000270354 family with sequence similarity 136, member A (FAM136A) pseudogene -1.5850 1.0000
63165 ENSG00000270325 BNIP3P9 BCL2 interacting protein 3 pseudogene 9 -1.5850 1.0000
63164 ENSG00000270306 TIA1 cytotoxic granule-associated RNA binding protein (TIA1) -1.5850 0.0438

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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