Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481568

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481568


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7180101000000000000000-755Sequence Read ArchiveSRP074598SRP074598_M41Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeGV oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000277549 phosphoglycerate mutase 1 (brain) (PGAM1) pseudogene 2.8074 0.0000
2 ENSG00000226318 RPS3AP38 RPS3A pseudogene 38 2.5850 0.0000
3 ENSG00000207628 MIR651 microRNA 651 2.3219 0.0002
4 ENSG00000225037 EIF1AX-AS1 EIF1AX antisense RNA 1 2.3219 0.0002
5 ENSG00000230769 riboflavin kinase (RFK) pseudogene 2.3219 0.0002
6 ENSG00000239471 RN7SL584P RNA, 7SL, cytoplasmic 584, pseudogene 2.3219 0.0000
7 ENSG00000240271 ribosomal protein L29 (RPL29) pseudogene 2.3219 0.0000
8 ENSG00000252282 RNU6-1089P RNA, U6 small nuclear 1089, pseudogene 2.3219 0.0000
9 ENSG00000253385 novel transcript 2.3219 0.0000
10 ENSG00000271278 ELOCP33 elongin C pseudogene 33 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000221288 MIR663B microRNA 663b -1.5850 0.3967
63172 ENSG00000221055 MIR1302-3 microRNA 1302-3 -1.5850 1.0000
63171 ENSG00000218175 ribosomal protein, large, P1 (RPLP1) pseudogene -1.5850 0.6191
63170 ENSG00000217482 HMGB1P17 high mobility group box 1 pseudogene 17 -1.5850 1.0000
63169 ENSG00000217377 AK4P5 adenylate kinase 4 pseudogene 5 -1.5850 1.0000
63168 ENSG00000216829 FGF7P4 fibroblast growth factor 7 pseudogene 4 -1.5850 0.6079
63167 ENSG00000216642 ribosomal protein L31 (RPL31) pseudogene -1.5850 1.0000
63166 ENSG00000215296 TMCO5B transmembrane and coiled-coil domains 5B (pseudogene) -1.5850 1.0000
63165 ENSG00000214584 PGGT1BP2 protein geranylgeranyltransferase type I subunit beta pseudogene 2 -1.5850 1.0000
63164 ENSG00000213985 ARP2 actin-related protein 2 homolog (yeast) (ACTR2) pseudogene -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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