Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481570

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481570


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5030203000000000000000-761Sequence Read ArchiveSRP074598SRP074598_M43Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeMetaphase II oocyteHumanGenitaliaBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000163793 DNAJC5G DnaJ heat shock protein family (Hsp40) member C5 gamma 2.8074 0.0000
2 ENSG00000265623 MIR3139 microRNA 3139 2.8074 0.0000
3 ENSG00000145949 MYLK4 myosin light chain kinase family member 4 2.5850 0.0000
4 ENSG00000206982 Y RNA 2.5850 0.0000
5 ENSG00000213130 EEF1DP5 eukaryotic translation elongation factor 1 delta pseudogene 5 2.5850 0.0000
6 ENSG00000233971 RPS20P10 ribosomal protein S20 pseudogene 10 2.5850 0.0000
7 ENSG00000248139 CUL4AP1 cullin 4A pseudogene 1 2.5850 0.0000
8 ENSG00000200183 RNU6-238P RNA, U6 small nuclear 238, pseudogene 2.4077 0.0000
9 ENSG00000199875 Y RNA 2.4037 0.0000
10 ENSG00000254911 SCARNA9 small Cajal body-specific RNA 9 2.4037 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000251600 novel transcript, antisense to GYPA -1.6610 1.0000
63172 ENSG00000249741 salvador homolog 1 (Drosophila) (SAV1) pseudogene -1.6610 1.0000
63171 ENSG00000226200 SGMS1-AS1 SGMS1 antisense RNA 1 -1.6610 0.0505
63170 ENSG00000197465 GYPE glycophorin E (MNS blood group) -1.6610 1.0000
63169 ENSG00000102309 PIN4 peptidylprolyl cis/trans isomerase, NIMA-interacting 4 -1.6610 1.0000
63168 ENSG00000106459 NRF1 nuclear respiratory factor 1 -1.6595 0.5903
63167 ENSG00000168938 PPIC peptidylprolyl isomerase C -1.6595 0.1739
63166 ENSG00000145358 DDIT4L DNA damage inducible transcript 4 like -1.6591 0.0752
63165 ENSG00000239774 novel transcript -1.6585 1.0000
63164 ENSG00000279907 TEC -1.6585 0.6334

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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