Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481571

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481571


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M44Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000257807 starch binding domain 1 (STBD1) pseudogene 3.9069 0.0000
2 ENSG00000207763 MIR617 microRNA 617 3.7004 0.0000
3 ENSG00000242922 RPL21P104 ribosomal protein L21 pseudogene 104 3.7004 0.0000
4 ENSG00000228751 HERV-FRD provirus ancestral Env polyprotein(ERVFRDE1) pseudogene 3.5850 0.0000
5 ENSG00000237160 HERV-FRD provirus ancestral Env polyprotein(ERVFRDE1) pseudogene 3.5850 0.0000
6 ENSG00000152404 CWF19L2 CWF19 like cell cycle control factor 2 3.4594 0.0000
7 ENSG00000214695 NPAP1P2 nuclear pore associated protein 1 pseudogene 2 3.3219 0.0000
8 ENSG00000215800 RSL24D1P4 ribosomal L24 domain containing 1 pseudogene 4 3.1699 0.0000
9 ENSG00000234435 LINC01432 long intergenic non-protein coding RNA 1432 3.1699 0.0000
10 ENSG00000212550 RNU1-78P RNA, U1 small nuclear 78, pseudogene 3.0850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000254006 novel transcript -2.3181 0.0000
63172 ENSG00000241745 RN7SL788P RNA, 7SL, cytoplasmic 788, pseudogene -2.3181 0.0000
63171 ENSG00000249158 PCDHA11 protocadherin alpha 11 -2.3171 0.0000
63170 ENSG00000220575 HTR5A-AS1 HTR5A antisense RNA 1 -2.3170 0.0000
63169 ENSG00000258674 novel protein -2.3167 0.0000
63168 ENSG00000186010 NDUFA13 NADH:ubiquinone oxidoreductase subunit A13 -2.3167 0.0000
63167 ENSG00000283339 mitochondrially encoded cytochrome c oxidase II (MT-CO2) pseudogene -2.3159 0.0000
63166 ENSG00000268543 novel transcript -2.3147 0.0000
63165 ENSG00000164171 ITGA2 integrin subunit alpha 2 -2.3143 0.0000
63164 ENSG00000114547 ROPN1B rhophilin associated tail protein 1B -2.3142 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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