Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481573

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481573


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M46Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000180016 OR1E1 olfactory receptor family 1 subfamily E member 1 2.8074 0.0001
2 ENSG00000275002 zinc finger, AN1-type domain 2A (ZFAND2A) pseudogene 2.8074 0.0001
3 ENSG00000226448 RPL7AP51 ribosomal protein L7a pseudogene 51 2.6569 0.0000
4 ENSG00000207309 RNU4-70P RNA, U4 small nuclear 70, pseudogene 2.5850 0.0005
5 ENSG00000213183 RPS7P8 ribosomal protein S7 pseudogene 8 2.5850 0.0005
6 ENSG00000233623 PGAM1P11 phosphoglycerate mutase 1 pseudogene 11 2.5850 0.0005
7 ENSG00000238000 PSME2P1 proteasome activator subunit 2 pseudogene 1 2.5850 0.0005
8 ENSG00000257959 novel transcript, antisense to OR11H12 2.5850 0.0000
9 ENSG00000264424 MYH4 myosin heavy chain 4 2.5850 0.0000
10 ENSG00000213133 PPP1R14BP5 protein phosphatase 1 regulatory inhibitor subunit 14B pseudogene 5 2.5061 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000227983 BRK1P2 BRK1 pseudogene 2 -1.8333 0.0005
63172 ENSG00000224371 novel transcript -1.8333 0.0314
63171 ENSG00000222664 RN7SKP123 RN7SK pseudogene 123 -1.8333 0.0314
63170 ENSG00000235354 RPS29P16 ribosomal protein S29 pseudogene 16 -1.8333 0.0000
63169 ENSG00000158985 CDC42SE2 CDC42 small effector 2 -1.8331 0.0000
63168 ENSG00000283829 MIR378I microRNA 378i -1.8330 0.0000
63167 ENSG00000106686 SPATA6L spermatogenesis associated 6 like -1.8329 0.0000
63166 ENSG00000204381 LAYN layilin -1.8327 0.0000
63165 ENSG00000188626 GOLGA8M golgin A8 family member M -1.8326 0.0000
63164 ENSG00000169194 IL13 interleukin 13 -1.8325 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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