Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481574

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481574


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M47Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000118181 RPS25 ribosomal protein S25 2.5850 0.0000
2 ENSG00000196655 TRAPPC4 trafficking protein particle complex 4 2.5850 0.0000
3 ENSG00000221697 MIR1275 microRNA 1275 2.5850 0.0000
4 ENSG00000222032 novel protein (LOC728009) 2.5850 0.0000
5 ENSG00000255839 novel transcript 2.5850 0.0000
6 ENSG00000283704 NA 2.5850 0.0000
7 ENSG00000254705 novel transcript 2.4534 0.0000
8 ENSG00000104361 NIPAL2 NIPA like domain containing 2 2.3219 0.0000
9 ENSG00000115363 EVA1A eva-1 homolog A, regulator of programmed cell death 2.3219 0.0000
10 ENSG00000199572 RNA5SP174 RNA, 5S ribosomal pseudogene 174 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000228335 cytokine induced protein 29 kDa (CIP29) pseudogene -1.6063 1.0000
63172 ENSG00000119523 ALG2 ALG2 alpha-1,3/1,6-mannosyltransferase -1.6056 1.0000
63170 ENSG00000141429 GALNT1 polypeptide N-acetylgalactosaminyltransferase 1 -1.6053 0.0792
63169 ENSG00000267200 MIR132 microRNA 132 -1.6050 0.1365
63168 ENSG00000267195 MIR212 microRNA 212 -1.6050 0.1365
63167 ENSG00000283301 MIR4520-2 microRNA 4520-2 -1.6046 0.4065
63166 ENSG00000264468 MIR4520-1 microRNA 4520-1 -1.6046 0.4065
63165 ENSG00000261996 novel transcript -1.6046 0.4065
63164 ENSG00000256806 C17orf100 chromosome 17 open reading frame 100 -1.6046 0.4065
10 ENSG00000199572 RNA5SP174 RNA, 5S ribosomal pseudogene 174 2.3219 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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