Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481575

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481575


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M48Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000100749 VRK1 VRK serine/threonine kinase 1 4.1699 0.0000
2 ENSG00000220131 ribosomal protein S14 (RPS14) pseudogene 3.2378 0.0000
3 ENSG00000279670 TEC 3.1699 0.0000
4 ENSG00000224776 RPSAP50 ribosomal protein SA pseudogene 50 3.1334 0.0000
5 ENSG00000270423 retinoblastoma binding protein 8, pseudogene 3.1334 0.0000
6 ENSG00000171180 OR2M4 olfactory receptor family 2 subfamily M member 4 3.0000 0.0000
7 ENSG00000207384 Y RNA 3.0000 0.0000
8 ENSG00000239473 RPL7P38 ribosomal protein L7 pseudogene 38 3.0000 0.0000
9 ENSG00000283532 MIR4317 microRNA 4317 3.0000 0.0000
10 ENSG00000268469 BNIP3P38 BCL2 interacting protein 3 pseudogene 38 2.9584 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000173335 CST9 cystatin 9 -2.3219 0.0920
63172 ENSG00000168126 OR2W6P olfactory receptor family 2 subfamily W member 6 pseudogene -2.3219 1.0000
63171 ENSG00000166167 BTRC beta-transducin repeat containing E3 ubiquitin protein ligase -2.3219 0.3662
63170 ENSG00000163631 ALB albumin -2.3219 0.0027
63169 ENSG00000152683 SLC30A6 solute carrier family 30 member 6 -2.3219 0.0920
63168 ENSG00000145375 SPATA5 spermatogenesis associated 5 -2.3219 0.0027
63167 ENSG00000134186 PRPF38B pre-mRNA processing factor 38B -2.3219 1.0000
63166 ENSG00000129071 MBD4 methyl-CpG binding domain 4, DNA glycosylase -2.3219 0.0920
63165 ENSG00000123095 BHLHE41 basic helix-loop-helix family member e41 -2.3219 0.0001
63164 ENSG00000120675 DNAJC15 DnaJ heat shock protein family (Hsp40) member C15 -2.3219 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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