Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2481576

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2481576


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7010000000000000000000-769Sequence Read ArchiveSRP074598SRP074598_M49Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeZygoteHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000249861 LGALS16 galectin 16 2.8074 0.0000
2 ENSG00000133131 MORC4 MORC family CW-type zinc finger 4 2.5850 0.0000
3 ENSG00000212604 NA 2.5850 0.0000
5 ENSG00000259627 novel transcript, antisense to TPM1 2.5850 0.0000
6 ENSG00000041802 LSG1 large 60S subunit nuclear export GTPase 1 2.3219 0.0000
7 ENSG00000092531 SNAP23 synaptosome associated protein 23 2.3219 0.0000
8 ENSG00000118094 TREH trehalase 2.3219 0.0000
9 ENSG00000135318 NT5E 5'-nucleotidase ecto 2.3219 0.0000
10 ENSG00000163032 VSNL1 visinin like 1 2.3219 0.0000
63164 ENSG00000166813 KIF7 kinesin family member 7 -1.7031 0.8128

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000101333 PLCB4 phospholipase C beta 4 -1.7078 1.0000
63172 ENSG00000225051 HMGB3P22 high mobility group box 3 pseudogene 22 -1.7078 0.6275
63171 ENSG00000267412 novel transcript, sense intronic to GNG7 -1.7069 0.7729
63170 ENSG00000092931 MFSD11 major facilitator superfamily domain containing 11 -1.7064 0.4060
63169 ENSG00000233621 LINC01137 long intergenic non-protein coding RNA 1137 -1.7053 0.1192
63168 ENSG00000225905 novel transcript -1.7047 0.8582
63167 ENSG00000231909 MAP1LC3BP1 microtubule associated protein 1 light chain 3 beta pseudogene 1 -1.7035 1.0000
63166 ENSG00000128578 STRIP2 striatin interacting protein 2 -1.7035 1.0000
63165 ENSG00000256802 novel transcript, antisense to TJP1 -1.7034 0.4309
63164 ENSG00000166813 KIF7 kinesin family member 7 -1.7031 0.8128

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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